Conventional biochemical simulation
Metabolic reactions and pathways
- Concentration-based (assumes ideal solution)
- Based on chemical and enzyme kinetics
- Deterministic differential equations
- Solved by numerical integration
- Simulators:
- DBSolve (Goryanin et al. 1999).
- GEPASI (Mendes and Kell 1993).
- MIST (Ehlde and Zacchi, 1995).
- SCAMP & JARNAC (Sauro 1993).